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Alexis GAMELIN authoredCode modifications: * [Fix] adts in TransverseMapSector * ComplexData.name_and_coefficients_table is now a staticmethod. * Extend WakeField to "mixed" componenets (xydip, yxdip, ...). * Small fix/improvements for rf.py (CavityResonator for n_bin=1) * [Fix] WakePotential.check_sampling method. * [Fix] Sweep.plot method. * Add Element.track_bunch_if_non_empty decorator. * Modify Bunch.binning to add a return_full_length optional parameter. * Modify Mpi.share_distributions for n_bin=1. * Modify TransverseSpaceCharge to work with track_alive = True. * Modify WakePotential for n_bin=1 and use track_bunch_if_non_empty decorator. * [Fix] IntrabeamScattering for nonuniform fills with Beam.mpi_switch == False * Modify PhysicalModel to return errors if needed. * Update BeamIonElement Project management: * Update pyproject.toml and poetry.lock with pytest-mock * Add assert_attr_changed test function.
Alexis GAMELIN authoredCode modifications: * [Fix] adts in TransverseMapSector * ComplexData.name_and_coefficients_table is now a staticmethod. * Extend WakeField to "mixed" componenets (xydip, yxdip, ...). * Small fix/improvements for rf.py (CavityResonator for n_bin=1) * [Fix] WakePotential.check_sampling method. * [Fix] Sweep.plot method. * Add Element.track_bunch_if_non_empty decorator. * Modify Bunch.binning to add a return_full_length optional parameter. * Modify Mpi.share_distributions for n_bin=1. * Modify TransverseSpaceCharge to work with track_alive = True. * Modify WakePotential for n_bin=1 and use track_bunch_if_non_empty decorator. * [Fix] IntrabeamScattering for nonuniform fills with Beam.mpi_switch == False * Modify PhysicalModel to return errors if needed. * Update BeamIonElement Project management: * Update pyproject.toml and poetry.lock with pytest-mock * Add assert_attr_changed test function.
test_element.py 14.93 KiB
import numpy as np
import pytest
from scipy.special import factorial
from utility_test_functions import assert_attr_changed
from mbtrack2 import (Element,
LongitudinalMap,
SynchrotronRadiation,
SkewQuadrupole,
TransverseMapSector,
TransverseMap,
transverse_map_sector_generator)
class TestElement:
def test_parallel_decorator_with_mpi_beam(self, beam_1bunch_mpi):
class SubElement(Element):
@Element.parallel
def track(self, bunch):
bunch.charge = 1
element = SubElement()
element.track(beam_1bunch_mpi)
assert beam_1bunch_mpi[beam_1bunch_mpi.mpi.bunch_num].charge == pytest.approx(1)
def test_parallel_decorator_with_beam(self, beam_non_uniform):
class SubElement(Element):
@Element.parallel
def track(self, bunch):
bunch.charge = 1
element = SubElement()
element.track(beam_non_uniform)
for i, bunch in enumerate(beam_non_uniform):
if beam_non_uniform.filling_pattern[i] == True:
assert bunch.charge == pytest.approx(1)
else:
assert bunch.charge == pytest.approx(0)
def test_parallel_decorator_with_bunch(self, small_bunch):
class SubElement(Element):
@Element.parallel
def track(self, bunch):
bunch.charge = 1
element = SubElement()
element.track(small_bunch)
assert small_bunch.charge == pytest.approx(1)
# Decorator correctly skips track method if bunch is empty
def test_skip_track_if_bunch_empty(self, mocker, generate_bunch):
mock_track = mocker.Mock()
decorated_track = Element.track_bunch_if_non_empty(mock_track)
empty_bunch = generate_bunch(mp_number=0)
decorated_track(None, empty_bunch)
mock_track.assert_not_called()
# Decorator calls track method if bunch is not empty
def test_call_track_if_bunch_not_empty(self, mocker, small_bunch):
mock_track = mocker.Mock()
decorated_track = Element.track_bunch_if_non_empty(mock_track)
decorated_track(None, small_bunch)
mock_track.assert_called_once()
# Decorator respects track_alive flag and calls track method
def test_respect_track_alive_flag(self, mocker, generate_bunch):
mock_track = mocker.Mock()
decorated_track = Element.track_bunch_if_non_empty(mock_track)
bunch = generate_bunch(track_alive=False)
decorated_track(None, bunch)
mock_track.assert_called_once()
# Track method executes when bunch is not empty and track_alive is True
def test_executes_with_nonempty_bunch(self, small_bunch):
called = []
@Element.track_bunch_if_non_empty
def track_method(self, bunch):
called.append(True)
small_bunch.track_alive = True
track_method(self, small_bunch)
assert called == [True]
# Track method executes when track_alive is False regardless of bunch size
def test_executes_when_track_alive_false(self, small_bunch):
called = []
@Element.track_bunch_if_non_empty
def track_method(self, bunch):
called.append(True)
small_bunch.track_alive = False
track_method(self, small_bunch)
assert called == [True]
# Empty bunch with track_alive=True skips track method execution
def test_skips_empty_bunch(self, generate_bunch):
called = []
@Element.track_bunch_if_non_empty
def track_method(self, bunch):
called.append(True)
empty_bunch = generate_bunch(alive=False)
empty_bunch.track_alive = True
track_method(self, empty_bunch)
assert not called
class TestLongitudinalMap:
# Track a Bunch object using the track method
def test_track_bunch(self, small_bunch, demo_ring):
long_map = LongitudinalMap(demo_ring)
assert_attr_changed(long_map, small_bunch, attrs_changed=["tau","delta"])
class TestSynchrotronRadiation:
# SynchrotronRadiation initializes correctly with default switch values
def test_initialization_with_default_switch(self, demo_ring):
sr = SynchrotronRadiation(demo_ring)
assert np.array_equal(sr.switch, np.ones((3,), dtype=bool))
# SynchrotronRadiation modifies 'delta', 'xp', and 'yp' attributes of Bunch
def test_modifies_bunch_attributes(self, small_bunch, demo_ring):
sr = SynchrotronRadiation(demo_ring)
assert_attr_changed(sr, small_bunch)
# switch array has all False values, ensuring no changes to Bunch
def test_no_changes_with_all_false_switch(self, small_bunch, demo_ring):
sr = SynchrotronRadiation(demo_ring, switch=np.zeros((3,), dtype=bool))
assert_attr_changed(sr, small_bunch, change=False)
class TestSkewQuadrupole:
# Initialize SkewQuadrupole with a positive strength and track a Bunch object
def test_modifies_bunch_attributes(self, small_bunch):
skew_quad = SkewQuadrupole(strength=0.1)
assert_attr_changed(skew_quad, small_bunch, attrs_changed=["xp","yp"])
class TestTransverseMapSector:
@pytest.fixture
def generate_trans_map_sector(demo_ring):
def generate(phase_diff = np.array([np.pi, np.pi]),
chro_diff = np.array([0.01, 0.01]),
adts=None):
alpha0 = np.array([1.0, 1.0])
beta0 = np.array([1.0, 1.0])
dispersion0 = np.array([0.0, 0.0, 0.0, 0.0])
alpha1 = np.array([2.0, 2.0])
beta1 = np.array([2.0, 2.0])
dispersion1 = np.array([0.1, 0.1, 0.1, 0.1])
sector = TransverseMapSector(demo_ring,
alpha0,
beta0,
dispersion0,
alpha1,
beta1,
dispersion1,
phase_diff,
chro_diff,
adts=adts)
return sector
return generate
# Track a Bunch object through TransverseMapSector and ensure coordinates are updated
def test_track_bunch_coordinates_update(self, generate_trans_map_sector, small_bunch):
sector = generate_trans_map_sector()
assert_attr_changed(sector, small_bunch, attrs_changed=["x", "xp", "y","yp"])
# Compute chromatic tune advances for a Bunch with non-zero chromaticity differences
@pytest.mark.parametrize("chro_diff", [(np.array([0.02, 0.03])),
(np.array([0.02, 0.03, 0.05, 0.06])),
(np.array([0.02, 0.03, 0.05, 0.06, 0.02, 0.03,])),
(np.array([0.02, 0.03, 0.05, 0.06, 0.02, 0.03, 0.05, 0.06])),
(np.array([0.02, 0.03, 0.05, 0.06, 0.02, 0.03, 0.05, 0.06, 0.05, 0.06])),])
def test_chromatic_tune_advances(self, generate_trans_map_sector, small_bunch, chro_diff):
# chro_diff = np.array([0.02, 0.03])
sector = generate_trans_map_sector(chro_diff=chro_diff)
tune_advance_x_chro, tune_advance_y_chro = sector._compute_chromatic_tune_advances(small_bunch)
order = len(chro_diff) // 2
coefs = np.array([1 / factorial(i) for i in range(order + 1)])
coefs[0] = 0
chro_diff = np.concatenate(([0, 0], chro_diff))
tune_advance_x = np.polynomial.polynomial.Polynomial(chro_diff[::2] * coefs)(small_bunch['delta'])
tune_advance_y = np.polynomial.polynomial.Polynomial(chro_diff[1::2] * coefs)(small_bunch['delta'])
assert np.allclose(tune_advance_x, tune_advance_x_chro)
assert np.allclose(tune_advance_y, tune_advance_y_chro)
# Check that adts are taken into account in calculation
def test_amplitude_dependent_tune_shifts(self, generate_trans_map_sector, small_bunch):
sector_no_adts = generate_trans_map_sector()
adts=[np.array([1e10, 1e10, 1e10]),
np.array([1e10, 1e10, 1e10]),
np.array([1e10, 1e10, 1e10]),
np.array([1e10, 1e10, 1e10])]
sector_adts = generate_trans_map_sector(adts=adts)
attrs = ["x", "xp", "y","yp"]
initial_values = {attr: small_bunch[attr].copy() for attr in attrs}
sector_no_adts.track(small_bunch)
no_adts = {attr: small_bunch[attr].copy() for attr in attrs}
for attr in attrs:
small_bunch[attr] = initial_values[attr]
sector_adts.track(small_bunch)
adts = {attr: small_bunch[attr].copy() for attr in attrs}
for attr in attrs:
assert not np.array_equal(initial_values[attr], no_adts[attr])
assert not np.array_equal(initial_values[attr], adts[attr])
assert not np.array_equal(adts[attr], no_adts[attr])
class TestTransverseMap:
class Old_TransverseMap(Element):
"""
Transverse map from mbtrack2 0.7.0.
Parameters
----------
ring : Synchrotron object
"""
def __init__(self, ring):
self.ring = ring
self.alpha = self.ring.optics.local_alpha
self.beta = self.ring.optics.local_beta
self.gamma = self.ring.optics.local_gamma
self.dispersion = self.ring.optics.local_dispersion
if self.ring.adts is not None:
self.adts_poly = [
np.poly1d(self.ring.adts[0]),
np.poly1d(self.ring.adts[1]),
np.poly1d(self.ring.adts[2]),
np.poly1d(self.ring.adts[3]),
]
@Element.parallel
def track(self, bunch):
"""
Tracking method for the element.
No bunch to bunch interaction, so written for Bunch objects and
@Element.parallel is used to handle Beam objects.
Parameters
----------
bunch : Bunch or Beam object
"""
# Compute phase advance which depends on energy via chromaticity and ADTS
if self.ring.adts is None:
phase_advance_x = (
2 * np.pi *
(self.ring.tune[0] + self.ring.chro[0] * bunch["delta"]))
phase_advance_y = (
2 * np.pi *
(self.ring.tune[1] + self.ring.chro[1] * bunch["delta"]))
else:
Jx = ((self.ring.optics.local_gamma[0] * bunch["x"]**2) +
(2 * self.ring.optics.local_alpha[0] * bunch["x"] *
bunch["xp"]) +
(self.ring.optics.local_beta[0] * bunch["xp"]**2))
Jy = ((self.ring.optics.local_gamma[1] * bunch["y"]**2) +
(2 * self.ring.optics.local_alpha[1] * bunch["y"] *
bunch["yp"]) +
(self.ring.optics.local_beta[1] * bunch["yp"]**2))
phase_advance_x = (
2 * np.pi *
(self.ring.tune[0] + self.ring.chro[0] * bunch["delta"] +
self.adts_poly[0](Jx) + self.adts_poly[2](Jy)))
phase_advance_y = (
2 * np.pi *
(self.ring.tune[1] + self.ring.chro[1] * bunch["delta"] +
self.adts_poly[1](Jx) + self.adts_poly[3](Jy)))
# 6x6 matrix corresponding to (x, xp, delta, y, yp, delta)
matrix = np.zeros((6, 6, len(bunch)), dtype=np.float64)
# Horizontal
c_x = np.cos(phase_advance_x)
s_x = np.sin(phase_advance_x)
matrix[0, 0, :] = c_x + self.alpha[0] * s_x
matrix[0, 1, :] = self.beta[0] * s_x
matrix[0, 2, :] = self.dispersion[0]
matrix[1, 0, :] = -1 * self.gamma[0] * s_x
matrix[1, 1, :] = c_x - self.alpha[0] * s_x
matrix[1, 2, :] = self.dispersion[1]
matrix[2, 2, :] = 1
# Vertical
c_y = np.cos(phase_advance_y)
s_y = np.sin(phase_advance_y)
matrix[3, 3, :] = c_y + self.alpha[1] * s_y
matrix[3, 4, :] = self.beta[1] * s_y
matrix[3, 5, :] = self.dispersion[2]
matrix[4, 3, :] = -1 * self.gamma[1] * s_y
matrix[4, 4, :] = c_y - self.alpha[1] * s_y
matrix[4, 5, :] = self.dispersion[3]
matrix[5, 5, :] = 1
x = (matrix[0, 0] * bunch["x"] + matrix[0, 1] * bunch["xp"] +
matrix[0, 2] * bunch["delta"])
xp = (matrix[1, 0] * bunch["x"] + matrix[1, 1] * bunch["xp"] +
matrix[1, 2] * bunch["delta"])
y = (matrix[3, 3] * bunch["y"] + matrix[3, 4] * bunch["yp"] +
matrix[3, 5] * bunch["delta"])
yp = (matrix[4, 3] * bunch["y"] + matrix[4, 4] * bunch["yp"] +
matrix[4, 5] * bunch["delta"])
bunch["x"] = x
bunch["xp"] = xp
bunch["y"] = y
bunch["yp"] = yp
def test_trans_map_base(self, demo_ring, small_bunch):
old_map = self.Old_TransverseMap(demo_ring)
current_map = TransverseMap(demo_ring)
attrs = ["x", "xp", "y","yp"]
initial_values = {attr: small_bunch[attr].copy() for attr in attrs}
old_map.track(small_bunch)
old = {attr: small_bunch[attr].copy() for attr in attrs}
for attr in attrs:
small_bunch[attr] = initial_values[attr]
current_map.track(small_bunch)
current = {attr: small_bunch[attr].copy() for attr in attrs}
for attr in attrs:
assert not np.array_equal(initial_values[attr], current[attr])
assert not np.array_equal(initial_values[attr], old[attr])
assert np.allclose(current[attr], old[attr])
def test_trans_map_adts(self, ring_with_at_lattice, small_bunch):
ring_with_at_lattice.get_adts()
old_map = self.Old_TransverseMap(ring_with_at_lattice)
current_map = TransverseMap(ring_with_at_lattice)
attrs = ["x", "xp", "y","yp"]
initial_values = {attr: small_bunch[attr].copy() for attr in attrs}
old_map.track(small_bunch)
old = {attr: small_bunch[attr].copy() for attr in attrs}
for attr in attrs:
small_bunch[attr] = initial_values[attr]
current_map.track(small_bunch)
current = {attr: small_bunch[attr].copy() for attr in attrs}
for attr in attrs:
assert not np.array_equal(initial_values[attr], current[attr])
assert not np.array_equal(initial_values[attr], old[attr])
assert np.allclose(current[attr], old[attr])