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Bacteria Drug UV analysis
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DISCO Beamline
Bacteria Drug UV analysis
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Created with Raphaël 2.2.0
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first import of a bacteria tracking version to follow moving bacteria
master
master
first import of a bacteria tracking version to follow moving bacteria
Add the option to choose on which filter you can stabilize the image (so that you could use the visible one)
Add many option to process data, with sift algorith to register stack, single bacteria figure, and correct bug in auto background substraction
Fix type error in default arguments of function
improve perf of the viewver and correct bug in xls export
Translate notebooks'
translation of comments
Translate bactos_functions.py comments to english
Add encoding 'latin1' to open metadata of MM
Add abspath for stardist finding
Add stardist location in extracting notebook example
Fix bug for MM1.4 date in run_processing
add new option in extraction notebook
Add chromatism aberation correction, get ready for ACAMAS
fix bug for MM1 in run_processing
fix default path to stardist
add local bg estimation and improve bactos viewver
re-import stardist trained model
Improve registration, remove spurious pixel lines of PIXIS and cosmics
improve visualisation of data for fixed time experiments
max name length in excel sheet export is 31
revert #fa1cf339fdcbf696ba6016f1dc42c37c59c8521f, the bug was that position where not updated when changing the experiment on the list, it's now fixed
Fix extra positions bug in compute_control_ratio. The positions vector add an extra position
fix bug, only two positions where used to register between filter1 and filter0 in extraction notebook
Get pixel size from summary in metadata, and check that pixel size is not None
update README to add a link to extraction notebook
Delete events.out.tfevents.1593847538.ORD00126.synchrotron-soleil.fr
remove model.zip and an old extract-notebook
Merge remote-tracking branch 'gitlab/master'
Update README.md
Add todo to readme
Add stardist trained model for Bacteria on DUV images
Add trainning notebook and procedure, Improve notebook for processing, add a trick to enlarge jupyter notebook view
Add reference to stardist
Add LICENSE
Update README.md
Correct title in readme.md
Create a readme
Fix bug in violinplot for the current expe'
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