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Created with Raphaël 2.2.030Jul24Jul1912Sep1Jul13Jun11827Oct2629Sep2819Apr9Dec87230Nov15Sep14109331Aug2827first import of a bacteria tracking version to follow moving bacteriamastermasterfirst import of a bacteria tracking version to follow moving bacteriaAdd the option to choose on which filter you can stabilize the image (so that you could use the visible one)Add many option to process data, with sift algorith to register stack, single bacteria figure, and correct bug in auto background substractionFix type error in default arguments of functionimprove perf of the viewver and correct bug in xls exportTranslate notebooks'translation of commentsTranslate bactos_functions.py comments to englishAdd encoding 'latin1' to open metadata of MMAdd abspath for stardist findingAdd stardist location in extracting notebook exampleFix bug for MM1.4 date in run_processingadd new option in extraction notebookAdd chromatism aberation correction, get ready for ACAMASfix bug for MM1 in run_processingfix default path to stardistadd local bg estimation and improve bactos viewverre-import stardist trained modelImprove registration, remove spurious pixel lines of PIXIS and cosmicsimprove visualisation of data for fixed time experimentsmax name length in excel sheet export is 31revert #fa1cf339fdcbf696ba6016f1dc42c37c59c8521f, the bug was that position where not updated when changing the experiment on the list, it's now fixedFix extra positions bug in compute_control_ratio. The positions vector add an extra positionfix bug, only two positions where used to register between filter1 and filter0 in extraction notebookGet pixel size from summary in metadata, and check that pixel size is not Noneupdate README to add a link to extraction notebookDelete events.out.tfevents.1593847538.ORD00126.synchrotron-soleil.frremove model.zip and an old extract-notebookMerge remote-tracking branch 'gitlab/master'Update README.mdAdd todo to readmeAdd stardist trained model for Bacteria on DUV imagesAdd trainning notebook and procedure, Improve notebook for processing, add a trick to enlarge jupyter notebook viewAdd reference to stardistAdd LICENSEUpdate README.mdCorrect title in readme.mdCreate a readmeFix bug in violinplot for the current expe'
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