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#!/bin/sh
# 04 February 2012, Laurent S. Nadolski, Synchrotron SOLEIL
#Option pour voir les details
#set -x
if [ $# -ne 1 ] # si le nombre de parametres n'est pas 1
then # affiche l'usage
echo Tracy3 not valid
echo Missing paremeter file
echo Use: $0 parameterfile
exit 1
fi
## create unique name for executable file
NUM=`date '+%d%m%y%H%M%s'`
DIR=$HOME/resultat_tracy/exe
# take file name and remove .prm extension if exists
INPUT_DIR=$PWD
INPUT_FILE=$(basename $1 .prm).prm
EXEC_DIR=/usr/local/applications/physmach/tracy3
NOM=$EXEC_DIR/psoltracy3
echo executable filename: $NOM
echo input parameter filename: $INPUT_FILE
JOB=psoltracy_script.$NUM
#########################
## creation du script PBS
echo "#!/bin/bash
#PBS -S /bin/bash
#PBS -N ParallelTracy
#PBS -j eo
#PBS -l nodes=2:ppn=8
#PBS -l mem=2000mb
#PBS -l walltime=1000:00:00
if [[ \$PBS_ENVIRONMENT = \"PBS_BATCH\" ]]; then
echo PBS_BATCH
N=\`cat \$PBS_NODEFILE |wc -l\`
echo \" ============================\"
echo \"Execution on:\"
cat \$PBS_NODEFILE
echo \" ============================\"
else
echo \"Not a batch job !\"
exit
fi
# IMPORTANT : put here the absolute name of the executable
set -x
## execute command
echo executable filename: $NOM
echo input parameter filename: $INPUT_DIR/$INPUT_FILE
### va dans /tmpdir/PBS du noeud ou le job est execute
cd \$TMPDIR
cp $INPUT_DIR/$INPUT_FILE .
### Excecute job soltracy parallel version
ulimit -s unlimited
time mpirun -n \$N -f \$PBS_NODEFILE -r ssh $NOM $INPUT_FILE
### SAVE THE RESULTS
DIRSAVE=\$HOME/resultat_tracy
mkdir -p \$DIRSAVE/result.\$PBS_JOBID
mv *.prm \$DIRSAVE/result.\$PBS_JOBID
mv [^0-9]*.out \$DIRSAVE/result.\$PBS_JOBID #not save the individual file
mv [^0-9]*.dat \$DIRSAVE/result.\$PBS_JOBID #not save the individual file
### email pour dire ou sont les resultats du job
CMD=\"mail -s \\\"Job \$PBS_JOBID\\\" \"\`cat $HOME/.forward\`
ssh isei \"\$CMD\" <<EOF
Hello $USER,
Work is done!
Please check results in \$DIRSAVE/result.\$PBS_JOBID
Hoping to see you again in our computation universe
Your friend ISEI
EOF
" > $JOB
## creation du script PBS
#########################
### launch PBS command
qsub -v INPUT_FILE=$1 $JOB
### clean up
rm $JOB