diff --git a/src/bactos_functions.py b/src/bactos_functions.py index ca9f8a2b23f6dec9f549415df820523234cf37d0..2200a21ad10cc74a36a3bb6554d7d8cb31bb2734 100755 --- a/src/bactos_functions.py +++ b/src/bactos_functions.py @@ -1123,7 +1123,7 @@ def run_processing(data_list, nom_sortie, MM_version=2, background='auto', stardist_path = None, bact_size=(0.5, 15), prob_thresh=None, time_to_extract_bacteria=0, build_bacteria_figures=True, bacteria_extract_mask='TRP', drift_algo='cor', register_filter=True, - register_stack=True, register_mask=True): + register_stack=True, register_mask=True, drift_filter=0): """ Loop over the given folder name to extract data and export them inside one hdf file (containing all data from each folder) @@ -1178,6 +1178,9 @@ def run_processing(data_list, nom_sortie, MM_version=2, background='auto', - register_mask, bool: Register the two filter based on bacteria mask (default True) + - drift_filter, bool: + The filter on which to register the images in time + Example: -------- @@ -1232,7 +1235,7 @@ def run_processing(data_list, nom_sortie, MM_version=2, background='auto', print('stabilisation') imgs = register_images(imgs, gaussian_size=0, move_filter=drug_filter, ref_filter=ctrl_filter, register_filter=register_filter, - register_stack=register_stack, show_info=False, up_factor=10, drift_filter=0, + register_stack=register_stack, show_info=False, up_factor=10, drift_filter=drift_filter, scale_correction=scale_correction, drift_algo=drift_algo)